Glyma05g03320 - SoyBase

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Report for Sequence Feature Glyma05g03320

Feature Type:	gene_model
Chromosome:	Gm05
Start:	2547232
stop:	2553043
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g03320

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G50400	AT	Annotation by Michelle Graham. TAIR10: purple acid phosphatase 27 \| chr5:20523575-20526231 REVERSE LENGTH=611	SoyBase	E_val: 0	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003993	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acid phosphatase activity	SoyBase	N/A	ISS
GO:0004722	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
GO:0046872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion binding	SoyBase	N/A	ISS
KOG1378	KOG	Purple acid phosphatase	JGI		ISS
PTHR22953	Panther	ACID PHOSPHATASE RELATED	JGI		ISS
PF00149	PFAM	Calcineurin-like phosphoesterase	JGI		ISS
UniRef100_G7JLE0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nucleotide pyrophosphatase/phosphodiesterase n=2 Tax=Medicago truncatula RepID=G7JLE0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K0B0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K0B0_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma05g03320

Locus	Gene Symbol	Protein Name
	PAP6	Purple acid phosphatase 6 gene
	PAP6	Purple acid phosphatase gene 6

Expression Patterns of Glyma05g03320

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g03320

Paralog	Evidence	Comments
Glyma17g13910	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g03320 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g047900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g03320

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g03320

Limit To All Plant Sequences

>Glyma05g03320.1   sequence type=CDS   gene model=Glyma05g03320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGATGAAGATAGAAGAACGTGTTAACATGAATCTGGTTCTGGTAGTGGCCTGGTTGGTCCAGTTGAACATTGTTTATGGCTTTGCTCACATTCATGGTTTTGGAGAGCAACCACTCTCCAGGATTGCCATCCACAAGGCTGTTGTTTCACTCCACAGTAGCGCTTCCATCACAGCCACCCCTTCTCTTCTTGGCACAAAGGGTGAGGATACACAATGGGTGACAGTAGATATTGATTACCCTGACCCATCTGCAGATGATTGGGTTGGAGTTTTCTCTCCTGCAAAGTTCAATGCATCAACCTGTCCACCTGTGAATGATCCAAAAGAAGTGATTCCATACATATGCTCAGCCCCAATTAAGTACAAGTTTATGAATTACTCCAACTCATACTATACGAAGACAGGAAAAGCTTCTTTGAAGTTCCAGTTGATCAATCAACGTGCAGATTTCTCCTTTGCGCTATTTTCAGGCGGACTGTTAAATCCTAAGCTTGTGGCAGTTTCCAATTTCATATCATTTGTCAATCCTAAAGTGCCTCTATATCCAAGACTTGCTCAGGGAAAGTCTTGGGATGAAATGACAGTTACTTGGACTAGTGGATATGACATAAATGAAGCTACACCCTTTGTTGAGTGGGGTCCTAAGGGCAAAACGCAAGTGCAATCTCCTGCTGGAACATTGACATTCGGTCGTAACAGCATGTGTGGTTCACCTGCACGAACTGTTGGTTGGCGTGACCCTGGTTTCATACACACAAGTTTTCTCAAAAACCTTTGGCCAAATTTAGTGTATACATATCAATTAGGGCATCTATTGTCTAATGGTTCTTATATTTGGAGCAAGAAATATTCATTCAAGTCATCACCATATCCTGGACAGGACTCATTGCAACGTGTTATCATATTTGGTGACATGGGGAAGGCCGAACGTGATGGTTCAAATGAGTATAATGCCTATCAACCTGGTTCACTTAACACCACTGACCAGCTCATCAAGGATTTAGAAAATATTGACATTGTTTTCCACATAGGAGATATTACTTATGCAAATGGATACCTCTCGCAGTGGGACCAATTCACAGCTCAAGTGGAACCAATTGCATCAACAGTGCCATATATGATTGCCAGTGGTAATCATGAACGTGATTGGCCCAACACAGGATCCTTTTATAGCACTACAGATTCAGGTGGTGAATGCGGAGTTTTGGCGCAGAACATGTTTTTTGTTCCAGCTGAAAACAGAGCAAACTTTTGGTATGCAATGGATTATGGCATGTTTCGCTTCTGCATAGCTGACACTGAACATGATTGGAGGGAAGGATCTGAACAATACAAATTCATTGAGCATTGTCTTGCAACAGTAGACAGACAGAAACAACCCTGGTTGATTTTTGCTGCTCACCGTGTGCTTGGATATTCCTCTGATTTTTGGTATGGTGTGGAGGGTTCATTTGAAGAGCCAATGGGAAGAGAGAGTTTGCAGAGACTTTGGCAGAAATATAAAGTAGATATTGCATTTTATGGCCATGTCCATAACTACGAAAGGACATGCCCCATTTATCAGAATCAATGTGTGAATGATGAAAGGTCTCACTATTCCGGTGTTGTGAATGGAACAATTCATGTTGTTGCTGGAGGAGCAGGAAGCCACTTGTCAAATTTCAGCCAAGTAACCCCTAAGTGGAGTCTTTACAGAGACTACGATTTTGGGTTTGTCAAGTTGACAGCATTCAGTCATTCATCTCTCCTCTTTGAATACAAGAAAAGCAGTGATGGAAAGGTCTACGATTCTTTTACCATTTCAAGGGATTACAAAGATGTCTTAGCCTGTGTGCATGATAGCTGTGAAGCAACCACTTCAGCAACTTGA

Predicted protein sequences of Glyma05g03320

Limit To All Plant Sequences

>Glyma05g03320.1   sequence type=predicted peptide   gene model=Glyma05g03320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKMKIEERVNMNLVLVVAWLVQLNIVYGFAHIHGFGEQPLSRIAIHKAVVSLHSSASITATPSLLGTKGEDTQWVTVDIDYPDPSADDWVGVFSPAKFNASTCPPVNDPKEVIPYICSAPIKYKFMNYSNSYYTKTGKASLKFQLINQRADFSFALFSGGLLNPKLVAVSNFISFVNPKVPLYPRLAQGKSWDEMTVTWTSGYDINEATPFVEWGPKGKTQVQSPAGTLTFGRNSMCGSPARTVGWRDPGFIHTSFLKNLWPNLVYTYQLGHLLSNGSYIWSKKYSFKSSPYPGQDSLQRVIIFGDMGKAERDGSNEYNAYQPGSLNTTDQLIKDLENIDIVFHIGDITYANGYLSQWDQFTAQVEPIASTVPYMIASGNHERDWPNTGSFYSTTDSGGECGVLAQNMFFVPAENRANFWYAMDYGMFRFCIADTEHDWREGSEQYKFIEHCLATVDRQKQPWLIFAAHRVLGYSSDFWYGVEGSFEEPMGRESLQRLWQKYKVDIAFYGHVHNYERTCPIYQNQCVNDERSHYSGVVNGTIHVVAGGAGSHLSNFSQVTPKWSLYRDYDFGFVKLTAFSHSSLLFEYKKSSDGKVYDSFTISRDYKDVLACVHDSCEATTSAT*

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